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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC008702.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 483aa MW: 52360.1 Da PI: 7.8763 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 290 | 336 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn rrR dri ++ L+el+P++ +K +Ka+ L +A+eY+ksLq EcC008702.20 290 VHNLSGRRRGDRISRKMKALQELIPQC-----TKADKASLLDEAIEYLKSLQ 336 69999**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.48E-13 | 283 | 340 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-15 | 284 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-15 | 285 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.777 | 286 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-9 | 289 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-12 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0007026 | Biological Process | negative regulation of microtubule depolymerization | ||||
GO:0007067 | Biological Process | mitotic nuclear division | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0043622 | Biological Process | cortical microtubule organization | ||||
GO:0050821 | Biological Process | protein stabilization | ||||
GO:0005876 | Cellular Component | spindle microtubule | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005938 | Cellular Component | cell cortex | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0009524 | Cellular Component | phragmoplast | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds | ||||
GO:0046983 | Molecular Function | protein dimerization activity | ||||
GO:0051010 | Molecular Function | microtubule plus-end binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
TSPVSTQHGT DDHFHPSRTY PRRRLRFLRV EDEIMELLWE DGRLVVQSQR PAMTRAAAIA 60 AGGGGGEVRQ GERRRRHRLF VQEDEVDSWL QYPFDVFNGG GFCSHLPRSP APCVTSSSDA 120 GCDFGTSDSG EVTSENAASA GSALVPKAAI GELSPSVSNE STAAEPKGTT HQASSGGVRG 180 HVRRERASGA AVDAPPGGGG GVGGEEGVAR DETMVASPPV GSATTGMGQL APAGAAPQVG 240 MQREKRKRKG RDAGDGEWLS DEKDVLFESA DAKERGAKST PAERSRRTNV HNLSGRRRGD 300 RISRKMKALQ ELIPQCTKAD KASLLDEAIE YLKSLQLQVQ IMSMGCSMVP VVFPGVQAYM 360 PCMNMGTATN VGMNPPTMLY PNILASSLMQ LSANGVHLSP GXXXXXXXXX XXXXXXXXXX 420 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGS FQQQQGLYYM 480 QQP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069677.1 | 0.0 | PREDICTED: transcription factor PIF1 | ||||
TrEMBL | A0A059AXD3 | 1e-168 | A0A059AXD3_EUCGR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 1e-36 | phytochrome interacting factor 3-like 5 |